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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs9614227 chr22:44691156 G/A 0.000147 400 15.67 15.38 7.18 KM Plot
LGG rs9614429 chr22:44690738 T/C 0.000152 403 15.67 14.6 7.18 KM Plot
LGG rs9614431 chr22:44691169 T/A 0.000176 398 15.67 15.38 7.18 KM Plot
LGG rs9631010 chr2:228087364 G/T 0 407 15.72 13.23 1.23 KM Plot
LGG rs9631011 chr2:228087432 A/T 0 407 15.72 14.43 1.27 KM Plot
LGG rs9631012 chr2:228087438 G/C 0 407 15.72 14.43 1.27 KM Plot
LGG rs9665686 chr10:82302047 C/T 7.22E-5 407 15.18 15.52 16.37 KM Plot
LGG rs9679095 chr2:228074184 A/T 0 407 1.23 13.23 15.72 KM Plot
LGG rs9689983 chr7:5024540 G/A 0.000194 402 15.18 16.6 12.03 KM Plot
LGG rs9696499 chr9:23691051 C/G 4.29E-6 407 24.97 11.63 15.88 KM Plot
LGG rs970553 chr13:65752362 A/G 8.03E-5 407 15.83 8.3 10.73 KM Plot
LGG rs9797939 chr2:114462264 C/T 0 406 15.63 14.53 0.23 KM Plot
LGG rs9804206 chr10:63332850 G/A 3.62E-5 401 15.93 11.83 17.88 KM Plot
LGG rs9823495 chr3:187645566 G/A 8.79E-5 394 14.75 18.63 8.07 KM Plot
LGG rs9825724 chr3:168573410 C/T 7.1E-5 407 8.07 13.7 15.63 KM Plot